What if the governments were subsidizing them with the intent of them being in private hands to begin with? i mean on the one hand they need to take census, collect taxes, maintain lines of communication and just generally remind people who's rule they're under but keeping that going yourself is....expensive, so why not provide loans in exchange for emergency commandeering and requiring a certain minimal amount of government contracts?
That keeps the various worlds in circulation, encourages growth on the various worlds, and since the crews will be more interested in keeping profitable over the duties they'd be held to as agents of the state, they would be helpful in developing industry that might be....er, unwilling to work with legal authorities? an isolated planet isn't gonna generate a lot of taxes, at the very least and if they happen to make some of that money selling suspiciously heavy crates of wool and flour well....if it doesn't harm the state what of it.