Mhm. For the most part, if I had to describe Protos' doctrinal use by most Clans (and somewhat mechanically as well), it would be "Clan-approved combat vehicles". They're a way to get lots of cheap units on the field, which is important for the Clans in lower-BV matches. As stated, they also do well in a strategic role, since sparing a few light Protos for recon duty is a lot easier than tapping an Omni for the same role.
The Horses are an interesting case of making extensive use of both combat vehicles and Protos, and tend to use them in roles that combat vehicles have difficulty performing (jumping/mountaineering, close-quarters combat, etc). From memory, they're also one of the only Inner Sphere Clans still making significant use of the ProtoMech as of ilClan.
The Society is interesting in that the majority of its main combat forces are ProtoMechs, having ready access to EI implants and a long line of bitter washouts eager to get back in the fight (plus some, uh, "volunteers" from the local population), counterbalanced by a limited ability to produce full-on 'Mechs. The Society also had the sneaky tactic of putting their commanders in ProtoMechs, particularly the Sprite; after all, if a Clan warrior sees a massive Osteon assault 'Mech raining down fire, and a small but durable Sprite ProtoMech plinking away with some missiles or a single ER Large Laser from the back line, which do you think they'll assume is the force commander? Now, I personally question the notion of giving your best commanders EI in the long run, but then the Society made a lot of poor decisions.
Finally, we know that the Word of Blake managed to make use of ProtoMechs, adapting a VDNI connector (albeit one that requires... sacrifices on the part of the pilot) and deploying at least a few to Necromo. Unfortunately, we don't really know how they were used beyond the broadest sense, since the only canon examples I'm aware of... weren't exactly a rational, cohesive fighting force by the time they were encountered. It's entirely possible that not enough examples existed for the Word to really effectively devise their own doctrine in the first place, to be honest.