I think it could work just fine, actually.
Instead of clones, of course, you simply have other sibkin from the same geneparents. And BT has had AI that's both advanced enough to fake intelligence and kooky enough to give contradictory and chaotic orders, which should theoretically be within reach for the Clan scientist caste. (I based the "Broken" AI in Necromo Nightmare on GLaDOS from Portal, after all.)
The question is really one of tone, I think. AToW can be a lethal system in personal combat, especially when Mechs and people meet, and the setting tone is usually a bit on the gritty side. Paranoia, on the other hand, take a more lighthearted approach to police societies, PC death(s), and such.
I could almost see making it in the style of my Halloween Adventures, had I not already dipped a toe in the rampant AI thing in Necromo Nightmare. (Sure, it was a zombie-themed story, but what is a loony AI with an army of drones if not a computerized master-zombie?)
- Herb