The rules for how to use a Mobile structure, and how to convert a mobile structure are at odds with each other.
In Alpha Strike pg 96 mobile structure segments are described as, "these units are actually treated as multiple, conjoined segments—
each with its own armor, structure, and firepower"
In addition on page 97; "Critical hits that stun or kill a mobile structure’s gunners affect only the weapons in the affected section"
Both rules are based on the premise that each segment of a mobile structure has it's own firepower.
Now the kicker.
pg 103 AS:C; "unlike armor and structure values, weapons are not dispersed by section."
So how is this supposed to work?
First option I have is to change the conversion rules. Each segment is calculated individually, firing arc for a section is defined by placing the large unit firing arcs diagram over the center of the mobile structures hex footprint. Hex's within that arc fire in that arc.
Second option is to modify the rules of using them, but instead of having critical hits affect sections, have them affect firing arcs.
Other problems.
What do you do with weapons that really only fire up, like say sub capital laser -3's? (In the center hex, surrounded by hex's of equal level, just to make things complicated.)